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A (41) | B (10) | C (39) | D (33) | E (25) | F (9) | G (10) | H (6) | I (30) | J (6) | K (3) | L (11) | M (21) | N (15) | O (21) | P (37) | Q (2) | R (26) | S (35) | T (22) | U (7) | V (5) | W (6)

	Predicting candidate genes from phenotypes, functions and anatomical site of expression	Biomedical Informatics, Rare disease
	Predicting protein functions using positive-unlabeled ranking with ontology-based priors	Neuro-Symbolic AI, protein function
	Prediction of Metabolic Pathway Involvement in Prokaryotic UniProtKB Data by Association Rule Mining	Biomedical Informatics, protein function
	Primalight Laboratory Research Group	Front Page
	Prioritizing genomic variants through neuro-symbolic, knowledge-enhanced learning	Neuro-Symbolic AI, Rare disease
	Privacy Awareness, Responsibility and Trustworthy Lab Research Group	Front Page
	Projects
	Prospective Students	Study
	Prospective Students	Study
	Prospective Students	Study
	Prospective Students	Study, Info
	Prospective Students	Study
	Protein function	protein function
	Protein function prediction as approximate semantic entailment	genomics
	PU-GO	Neuro-Symbolic AI, protein function
	Publications
	Publications
	Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology	Phenotype informatics, Semantic similarity
	Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies	Applied Ontology, Ontology engineering
	Ranking Adverse Drug Reactions With Crowdsourcing	Biomedical Informatics, Drug mechanisms
	Rare disease	Rare disease
	Recent Publications
	Representing physiological processes and their participants with PhysioMaps	Applied Ontology
	Research	Research
	Research
	Research	Research
	Research
	Research	Research
	Research Areas	Research
	Research Areas	Research
	Research Areas	Research
	Research Areas	Research
	Research Areas	Research
	Research Focus	Research
	Research Related Resources	Research, Resources
	Research Resources	Research, Resources
	Research Strategy
	Research topics
	Resilient Computing and Cybersecurity	Research
	Resources and Downloads
	Roberto Di Pietro Research Group	Front Page
	Robotics	Research
	Robotics, Intelligent Systems, and Control Lab
	Robust Knowledge Graph Embedding via Denoising	Neuro-Symbolic AI, Ontology engineering
	Rolf Krause Research Group	Front Page
	Sa1216: Development of colorectal cancer and matched healthy organoids from Saudi patients: a case study	bioengineering, Biomedical Informatics
	Saudi Summer Internship (SSI)	Opportunities
	Scientific Computing and Machine Learning Research Group	Front Page
	Secure Next Generation Resilient Systems Lab Research Group	Front Page
	Security Research Bearing Experimental Results Research Group	Front Page
	Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes	Neuro-Symbolic AI, Rare disease
	Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology	Applied Ontology, Ontology engineering, Phenotype informatics
	Semantic prioritization of novel causative genomic variants	Rare disease, Semantic similarity
	Semantic similarity	Semantic similarity
	Semantic similarity and machine learning with ontologies	Applied Ontology, Neuro-Symbolic AI, Semantic similarity
	Semantic Systems Biology: Formal Knowledge Representation in Systems Biology for Model Construction, Retrieval, Validation and Discovery	Applied Ontology, Drug mechanisms
	Semantic units: organizing knowledge graphs into semantically meaningful units of representation	Applied Ontology
	Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference	Neuro-Symbolic AI
	Sensing and Localization	Research
	Sensors Research Group	Front Page
	SIDEKICK: A Semantically Integrated Resource for Drug Effects, Indications, and Contraindications	Drug mechanisms, Neuro-Symbolic AI
	Similarity-based search of model organism, disease and drug effect phenotypes	Drug mechanisms, Rare disease, Semantic similarity
	Smart Health	Research
	Smart, Advanced Memory devices and Applications lab Research Group	Front Page
	SmuDGE	Biomedical Informatics, Drug mechanisms, Semantic similarity
	Software-Defined Advanced Networked and Distributed Systems Research Group	Front Page
	SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL	Ontology engineering
	Spatio-Temporal Statistics and Data Science Research Group	Info
	Spin-Offs
	Startups
	STARVar	genomics, Phenotype informatics, Rare disease
	Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes	Biomedical Informatics, Rare disease
	Statistical Methodology	Research
	Statistics Program	Front Page
	Stochastic Numerics Research Group	Front Page
	Stochastic Processes and Mathematical Statistics	Front Page
	Structural and Functional Bioinformatics Research Group	Front Page
	Student Enrichment and Development	Study
	Su1295: Chemically defined peptide-based matrices enabling the development of colorectal organoid models for therapeutic applications and disease modeling	bioengineering, Drug mechanisms
	Systematic Analysis of Experimental Phenotype Data Reveals Gene Functions	Biomedical Informatics, Phenotype informatics
	Taxon and trait recognition from digitized herbarium specimens using deep convolutional neural networks	Biomedical Informatics, Phenotype informatics
	Teaching
	Text-mining solutions for biomedical research: enabling integrative biology	Biomedical Informatics
	The anatomy of phenotype ontologies: principles, properties and applications	Applied Ontology, Phenotype informatics
	The application of Large Language Models to the phenotype-based prioritization of causative genes in rare disease patients	Biomedical Informatics, Rare disease
	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens	protein function
	The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants	Applied Ontology, Phenotype informatics
	The Impact of Mechanical Cues on the Metabolomic and Transcriptomic Profiles of Human Dermal Fibroblasts Cultured in Ultrashort Self-Assembling Peptide 3D Scaffolds	bioengineering, genomics
	The informatics of developmental phenotypes	Biomedical Informatics, Phenotype informatics
	The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.	Biomedical Informatics, Ontology engineering
	The RNA Ontology (RNAO): An Ontology for Integrating RNA Sequence and Structure Data	Applied Ontology, Biomedical Informatics
	The role of ontologies in biological and biomedical research: a functional perspective	Applied Ontology, Biomedical Informatics
	The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery	Applied Ontology, Ontology engineering
	The Units Ontology: a tool for integrating units of measurement in science	Applied Ontology, Ontology engineering
	Thematic series on biomedical ontologies in JBMS: challenges and new directions	Applied Ontology
	Theoretical Computer Science	Research
	Theses
	To MIREOT or not to MIREOT? A case study of the impact of using MIREOT in the Experimental Factor Ontology (EFO)	Applied Ontology, Ontology engineering
	Topics
	Towards Improving Phenotype Representation in OWL	Applied Ontology, Phenotype informatics